BioinformatiCS

THE PLATFORM

A PLATFORM DEDICATED…

To the exploitation of your data or existing data up to their valorisation.

The platform offers to analyse your data with existing tools but can also develop original methods and tools specific to your needs.

The bioinformatics platform supports you in the exploitation of your data or already existing data, up to the formatting, the valorisation of the results and the writing of publications.

Our platform has access to two supercomputers: GénoToul and CALMIP.
Thanks to these partners, whom we would like to thank, we have access to a great deal of computing power.

 

 

THE LANGUAGES USED…

R

Language particularly well-suited to statistics and graphic representations.

PYTHON

Language that can be used in numerous contexts and is widely used by the scientific community. It has a specific library for biology.

PERL

The most powerful language to extract text data. Perl is used in linguistics. This is a very useful language to automate repetitive tasks under Linux.

JULIA

High-quality and high performance programming language for digital calculations. Created by MIT in 2012, this very recent language is nearing the C speed in calculation.

GO

This language was developed by Google to replace C/C++. Particularly efficient in multithreading, this language also produces programs that are portable and simple to install by means of cross-compilation.

We choose the language according to your project.

These new tools ca be the subject of publications and are at your disposal.

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expertise

SINGLE CELL RNASEQ
AND SPATIAL TRANSCRIPTOMICS

From sequence alignment to in-depth analysis, we provide you with simple tools for their exploitation.


TRANSCRIPTOMICS

 

Whatever the technology
(Nanostring, chip, RNAseq) we offer analyses adapted to your needs, such as differential expression or
pathway analysis

REPRESENTATION
GRAPHICS

 

t-SNE and UMAP maps, vulcano plot, box plot, violine, heatmap, radar plot, ROC curves, survival curves, etc… according to your needs.

 

PROTEOMICS

DDA and DIA data processing

 

And much more: Please do not hesitate to contact us for more information about our field of expertise.

members of the platform

Marie Tosolini

Ingénieur ou Technicien / Engineer
or Technician

 

Frédéric Pont

Ingénieur ou Technicien / Engineer
or Technician

 

Marion Perrier

Ingénieur ou Technicien / Engineer
or Technician
 

Juan-Pablo Cerapio Arroyo

Ingénieur ou Technicien / Engineer
or Technician

 
 
Centre de Recherches en Cancérologie de Toulouse

Centre de Recherches en Cancérologie de Toulouse (Oncopole)

Toulouse – FR

Nous contacter

05 82 74 15 75

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